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Predict spatial proteomics from H&E histology slides

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Strand AI builds AI models that predict missing biological readouts from the data researchers already have. The first capability available through this connector is Lattice, which predicts spatially resolved protein-marker channels (virtual multiplex immunofluorescence) from routine H&E histology slides, so teams can recover spatial proteomics from archival tissue without extra staining or sample consumption.

In Claude, researchers can upload a de-identified whole-slide image, browse samples and available markers, estimate credits before submitting, run or cancel an inference job, request cell segmentation, and download OME-Zarr or OME-TIFF results.

OAuth binds each connection to one Strand AI user and organization. Reads, marker discovery, segmentation, and dry-run estimates are credit-free; a real submission reserves the displayed estimate. Slide and result bytes transfer directly between the client and Strand AI-managed storage. Slides must be de-identified. Research use only. Not for clinical or diagnostic procedures.

Tools
10

exposed by this connector

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#5008of 7,43773places down24h96places down7d
#3,899#4,282#4,665#5,048Sep 28Oct 4Oct 10Oct 16Oct 22Oct 27

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1,3851,9852,5853,1853,785Sep 28Oct 4Oct 10Oct 16Oct 22Oct 27

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1 listing change logged · latest Oct 7: One-liner. See what changed

In its categories

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Health life sciences113th of 164 by popularity · not ranked by trending score
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Data analytics2,013th of 2,798 by popularity · not ranked by trending score
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Install

claude mcp add --transport http strand-ai https://mcp.strandai.com/mcp

Tools

  • cancel_job
  • download_results
  • get_job
  • get_sample
  • list_markers
  • list_samples
  • segment_sample
  • submit_job
  • update_sample
  • upload_sample
Categories
Made by
Strand AI · Website
Sign-in
Required
Connector URL
https://mcp.strandai.com/mcp
Transport
Streamable HTTP
Permissions
Acts only within the Strand AI organization the user authorizes at connection. It can list available markers and samples; read sample details, job status, and results; upload de-identified H&E slides the user provides; update sample metadata; run cell segmentation; and submit or cancel inference jobs that draw on the organization's prepaid credits. It cannot access other organizations, Claude conversations or memory, or any files the user does not explicitly provide.
Works with
Claude, Claude API, Claude Code, Claude Desktop
Added
August 31, 2026
More info
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